List of Environment Settings on Mac OS X



Clean Install

Reinstall macOS

Xcode

Install Xcode from Mac App Store.

Xcode

You can skip this if you do not need to have Xcode. In fact, the command line tools can be installed without having Xcode.

Command Line Tool

Install Command Line Tool from Terminal

xcode-select --install

This works even if Xcode is not installed in you Mac.

Homebrew

Install homebrew.

Homebrew

Emacs

Install Emacs with cask:

brew cask install emacs

Edit ".emacs.d/init.el".

Cmake

brew install cmake

Doxygen

brew install doxygen

graphViz

brew install graphviz --with-app --with-bindings

hdf5

brew tap homebrew/science

brew install hdf5 --enable-cxx

OpenMPI

brew install open-mpi

GSL

brew install gsl

TeX

Download "MacTeX.pkg" from

MacTEX

and install it.

Pythia

Pythia

Add lines below in ~/.zprofile or ~/.zshrc. XXXX is version nunber of your pythia.

                export PYTHIAINSTALLDIR=''location of pythia root directory''
                export PYTHIA8DIR=${PYTHIAINSTALLDIR}/pythiaXXXXX
                export PYTHIA8_ROOT_DIR=${PYTHIAINSTALLDIR}/pythiaXXXX

Edit Pythia's Makefile.

                -include Makefile.inc      →      -include $(PYTHIA8DIR)/Makefile.inc

FastJet

FastJet

or

brew install fastjet

Enable to use FastJet in Pythia. In Pythia's root directory,

./configure --with-fastjet3="your fastjet's location"

ROOT

ROOT

Add lines below in .bashrc. root_XXXX is root directory name of your root.

                export ROOTSYS=''location of root_XXX''/root_XXXX/
                export PATH=$PATH:$ROOTSYS/bin
                export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib
                export PYTHONPATH=$ROOTSYS/lib:$PYTHONPATH

Python (Anaconda)

Anaconda

Copy the path for Anaconda saved in ~/.bash_profile to ~/.zshprofile. Enable to use the other version of python.

conda create -n py36 python=3.6 anaconda

Add lines below in .bashrc.

                alias py3='source ''location of anaconda root directory''/anaconda2/bin/activate py36'
                alias py2='source ''location of anaconda root directory''/anaconda2/bin/deactivate'

Then, you can use commands to switch between python 3 and python 2:

python3→python3: 'py3'
python3→python2 'py2'

PyROOT with Anaconda's Python

[Attention] The method below does not work with current version of Annaconda.

reference

otool -L ''location of root directory of root_XXX''/root_XXXX/lib/libPyROOT.so

In my case,

                @rpath/libPyROOT.so (compatibility version 0.0.0, current version 0.0.0)
                /System/Library/Frameworks/Python.framework/Versions/2.7/Python (compatibility version 2.7.0, current version 2.7.10)
                @rpath/libTree.so (compatibility version 0.0.0, current version 0.0.0)
                @rpath/libRIO.so (compatibility version 0.0.0, current version 0.0.0)
                @rpath/libCore.so (compatibility version 0.0.0, current version 0.0.0)
                /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 400.9.0)
                /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1252.0.0)

Then,

                sudo install_name_tool -change /System/Library/Frameworks/Python.framework/Versions/2.7/Python ''location of anaconda root directory''/anaconda2/lib/libpython2.7.dylib ''location of root directory of root_XXX''/root_XXXX/lib/libPyROOT.so

Again,

otool -L ''location of root directory of root_XXX''/root_XXXX/lib/libPyROOT.so

You can see

                @rpath/libPyROOT.so (compatibility version 0.0.0, current version 0.0.0)
                ''location of anaconda root directory''/anaconda2/lib/libpython2.7.dylib (compatibility version 2.7.0, current version 2.7.10)
                @rpath/libTree.so (compatibility version 0.0.0, current version 0.0.0)
                @rpath/libRIO.so (compatibility version 0.0.0, current version 0.0.0)
                @rpath/libCore.so (compatibility version 0.0.0, current version 0.0.0)
                /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 400.9.0)
                /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1252.0.0)

Now you can use PyROOT in Anaconda's python.

HepMC

HepMC

iCloud

Maka a symbolic link:

ln -s Library/Mobile\ Documents/com~apple~CloudDocs ~/iCloud

RSA Key permission

chmod 0600 ~/.ssh/'key's name'

others

・Three Finger Drag
SystemPreference → Keyboard → Mouse & Trackpad → Trackpad Options... Trun on "Three finger drag."


・Caps Lock Key → Control Key
SystemPreference → Accessibility → Modifier Keys... Choose "^Control" for CapsLock

・Trun off automatic spelling correction
SystemPreference → Keyboard → Trun off "Correct spelling automatically."






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